VISDB Viral Integration Site DataBase

VIS ID

TVIS30005352

Fusion event

HIV-RPRD2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q21.2

Reference genome

Start

End

150447929/150475453 (Hg38)

Orient

-

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-26b-5p ; hsa-mir-16-5p ; hsa-mir-296-3p ; hsa-mir-769-5p ; hsa-mir-320a ; hsa-mir-24-3p ; hsa-let-7e-5p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-6881-5p ; hsa-mir-106a-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-450a-2-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-2110 ; hsa-mir-4295 ; hsa-mir-4271 ; hsa-mir-3666 ; hsa-mir-3927-3p ; hsa-mir-3935 ; hsa-mir-4725-3p ; hsa-mir-4747-5p ; hsa-mir-5196-5p ; hsa-mir-6831-5p ; hsa-mir-6780b-5p ; hsa-mir-577 ; hsa-mir-4419a ; hsa-mir-4510 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-1321 ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-302a-5p ; hsa-mir-335-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-545-3p ; hsa-mir-2278 ; hsa-mir-3123 ; hsa-mir-4311 ; hsa-mir-5579-3p ; hsa-mir-6838-5p ; hsa-mir-30b-3p ; hsa-mir-149-3p ; hsa-mir-1249-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-4728-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6797-5p ; hsa-mir-6871-5p ; hsa-mir-6883-5p ; hsa-mir-6894-5p ; hsa-mir-7106-5p ; hsa-mir-1273h-5p ; hsa-mir-23a-3p ; hsa-mir-23b-3p ; hsa-mir-130a-5p ; hsa-mir-23c ; hsa-mir-2355-5p ; hsa-mir-4436b-5p ; hsa-mir-6509-3p ; hsa-mir-6742-5p ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-6825-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6134 ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-1273g-3p ; hsa-mir-181a-2-3p ; hsa-mir-4459 ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-6822-5p ; hsa-mir-6750-5p ; hsa-mir-5584-5p ; hsa-mir-590-5p ; hsa-mir-21-5p ; hsa-mir-4777-5p ; hsa-mir-526a ; hsa-mir-523-5p ; hsa-mir-522-5p ; hsa-mir-520c-5p ; hsa-mir-519c-5p ; hsa-mir-519b-5p ; hsa-mir-519a-5p ; hsa-mir-518f-5p ; hsa-mir-518e-5p ; hsa-mir-518d-5p ; hsa-mir-8067 ; hsa-mir-6508-5p ; hsa-mir-6857-5p ; hsa-mir-6763-5p ; hsa-mir-3150a-3p ; hsa-mir-4452 ; hsa-mir-183-3p ; hsa-mir-6799-5p ; hsa-mir-219a-2-3p ; hsa-mir-219b-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-1299 ; hsa-mir-409-5p ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-6128 ; hsa-mir-875-3p ; hsa-mir-140-5p ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-296-5p ; hsa-mir-548aj-5p ; hsa-mir-548f-5p ; hsa-mir-548g-5p ; hsa-mir-548p ; hsa-mir-548x-5p ; hsa-mir-661 ; hsa-mir-6735-3p ; hsa-mir-6815-5p ; hsa-mir-6865-5p ; hsa-mir-7160-3p

Nearest miRNA

hsa-mir-101-1/Upstream/2087090; hsa-mir-1182/Downstream/16892;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/110873, chr1-CpG: 38/Downstream/40107

Upstream sequence

ATTCTCTTTGCTGCTCTTGTTTAAGCTAAAAGTAGTGTTTACTTGATAAGGCTCTCTGACCATTTAATTTTTATCAGAAAATGTGGGGATGTCAGGAAAG

Downstream sequence

TGGCTTCCTGAACGTTGGGGCGGGATAATTGTCCTCAAAAGTATGATGGTTAATACATGAAAGGAAGACTTTGTTGGACAGTTTCGAAGGTGGGCTTTTA