Basic Information
VIS ID
TVIS30005355
Fusion event
HIV-GOLPH3L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
150647808/150675332 (Hg38)
End
150647808/150675332 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1F
Target gene
GOLPH3L
miRNAs that regulate target gene
hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-128-3p ; hsa-mir-218-5p ; hsa-mir-1273e ; hsa-mir-6807-5p ; hsa-mir-6077 ; hsa-mir-3190-3p ; hsa-mir-7-5p ; hsa-mir-1233-3p ; hsa-mir-1225-3p ; hsa-mir-219b-3p ; hsa-mir-6840-3p ; hsa-mir-302f ; hsa-mir-10b-3p ; hsa-mir-491-3p ; hsa-mir-493-3p ; hsa-mir-6715b-3p
Nearest miRNA
hsa-mir-101-1/Upstream/123318; hsa-mir-1182/Downstream/870464;
Nearest TSS
ENST00000473358/Upstream/45720; ENST00000636087/Downstream/21692;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/45607, chr1-CpG: 21/Downstream/250811
Upstream sequence
CTTAGAAGAGCAAAACTAGGTAAGTGTAGATTTTTTTTTTTTGTGGTCAAATAGCttttctctccttgattactagcatatacacattgtagaaaatttg
Downstream sequence
aaaacaaaaaaattcataaaaaataaaaatcacccataaattccattaccctatgatcatatgggtgtatgtacaaccaaacttttctgtatacataaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate