Basic Information
VIS ID
TVIS30005358
Fusion event
HIV-ARNT integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
150847934/150875458 (Hg38)
End
150847934/150875458 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1F
Target gene
ARNT
miRNAs that regulate target gene
hsa-mir-107 ; hsa-mir-877-3p ; hsa-mir-324-5p ; hsa-mir-4639-3p ; hsa-mir-221-3p ; hsa-mir-218-5p ; hsa-mir-6873-3p ; hsa-mir-3941 ; hsa-mir-933 ; hsa-mir-550b-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-1304-3p ; hsa-mir-3680-5p ; hsa-mir-4798-3p ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-4717-3p
Nearest miRNA
hsa-mir-101-1/Upstream/323444; hsa-mir-1182/Downstream/670338;
Nearest TSS
ENST00000473358/Upstream/38959; ENST00000636087/Downstream/1110;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/245733, chr1-CpG: 21/Downstream/50685
Upstream sequence
TCAACTGTCCTATCAAAATCTGGATATTGCAAAATCATACTGCCTTTCAGTAACATGAAAAAAAATCTAATTTAAATTTCAACGTGGGGATGGGGGTAAT
Downstream sequence
CACTCCTACTGTTTTATTTTCAAGAAATTCTCCGCCCCACGCAACACACACACATATCTCAAGGCCCTTTTTAAGGCTATCAAATATATTGGTTTTTGGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate