Basic Information
VIS ID
TVIS30005359
Fusion event
HIV-LOC107985204 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
150892787/150920311 (Hg38)
End
150892787/150920311 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1F
Target gene
LOC107985204
Nearest miRNA
hsa-mir-101-1/Upstream/368297; hsa-mir-1182/Downstream/625485;
Nearest TSS
ENST00000473358/Upstream/33175; ENST00000463774/Downstream/5952;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/290586, chr1-CpG: 21/Downstream/5832
Nearby gene
SETDB1(No orient, 6028)
Upstream sequence
gtggatcatgaggtcaggagtttgagaccagcctggccaatatggtgaaactccgtctccactaaaaatacaaaaagtagccaggcgtggtggtgcgtgc
Downstream sequence
ctgtagtcccagctatcaggaggctgaggcagaagaaccgcttgaacctgggaggtggaggttacagtgagccgagatggtgccactgcactccagcctg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate