VISDB Viral Integration Site DataBase

VIS ID

TVIS30005367

Fusion event

HIV-GATAD2B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q21.3

Reference genome

Start

End

153857801/153885325 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-590-3p ; hsa-mir-181a-5p ; hsa-mir-32-5p ; hsa-mir-30a-5p ; hsa-mir-744-5p ; hsa-mir-505-5p ; hsa-mir-221-5p ; hsa-mir-766-3p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-331-3p ; hsa-mir-365a-3p ; hsa-mir-186-5p ; hsa-mir-221-3p ; hsa-let-7c-5p ; hsa-mir-1260b ; hsa-mir-25-3p ; hsa-mir-92a-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-338-5p ; hsa-mir-92b-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-1199-5p ; hsa-mir-6751-3p ; hsa-mir-4760-3p ; hsa-mir-6832-3p ; hsa-mir-642a-5p ; hsa-mir-3120-3p ; hsa-mir-4469 ; hsa-mir-6892-3p ; hsa-mir-335-3p ; hsa-mir-2276-5p ; hsa-mir-4468 ; hsa-mir-3915 ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-765 ; hsa-mir-4533 ; hsa-mir-7-5p ; hsa-mir-3928-3p ; hsa-mir-6876-5p ; hsa-mir-4779 ; hsa-mir-4476 ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-6824-5p ; hsa-mir-8059 ; hsa-mir-4471 ; hsa-mir-6823-3p ; hsa-mir-2114-3p ; hsa-mir-29a-5p ; hsa-mir-4293 ; hsa-mir-6783-5p ; hsa-mir-6792-3p ; hsa-mir-6075 ; hsa-mir-3162-3p ; hsa-mir-6865-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-329-5p ; hsa-mir-4801 ; hsa-mir-4731-3p ; hsa-mir-513b-5p ; hsa-mir-3119 ; hsa-mir-6069 ; hsa-mir-7151-5p ; hsa-mir-3158-3p ; hsa-mir-4446-3p ; hsa-mir-5088-5p ; hsa-mir-589-3p ; hsa-mir-4713-5p ; hsa-mir-1260a ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-6887-3p ; hsa-mir-1224-3p ; hsa-mir-1255b-2-3p

Nearest miRNA

hsa-mir-101-1/Upstream/195532; hsa-mir-1182/Downstream/77026;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/101466, chr1-CpG: 48/Downstream/37036

Upstream sequence

GTAACCATGCTTGCCTTGCCAATCTCCACTTTACCCACTGGATTAAAGAAAATATTAGCCAAATATGATGGAAGTAAAAACACATAAAGTCTCTGACAGA

Downstream sequence

CATGTATGATCTCCACTCATAGATGATTTCACCCAGGACTACTTCTGAAAAGCTAAGGACATGAGCTTCAAGTCAGTGACAAGTAAAGGaaaaatattta