Basic Information
VIS ID
TVIS30005372
Fusion event
HIV-UBAP2L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
154197156/154224680 (Hg38)
End
154197156/154224680 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1F
Target gene
UBAP2L
miRNAs that regulate target gene
hsa-let-7b-5p ; hsa-mir-760 ; hsa-mir-93-3p ; hsa-mir-484 ; hsa-mir-320a ; hsa-mir-125b-5p ; hsa-mir-93-5p ; hsa-mir-92a-3p ; hsa-mir-25-3p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7a-5p ; hsa-mir-3679-3p ; hsa-mir-2355-5p ; hsa-mir-6793-3p ; hsa-mir-5092
Nearest miRNA
hsa-mir-101-1/Upstream/30937; hsa-mir-1182/Downstream/751013;
Nearest TSS
ENST00000473358/Upstream/3352; ENST00000466173/Downstream/402;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/3368, chr1-CpG: 43/Downstream/47554
Upstream sequence
AGCAATGGAGGTCACATGCAGCTTACATAAAAAAGGTTGTAAGGCAGGTAAGGCTGTTTTCTTAGGTGATTGAATACAGTATTTAAAATTATTTCTCTGG
Downstream sequence
AGTGTAGACTAATCTCCTTCCTGGAAGGTTTTTGTTTCCAGACTTTACTGATTATCTTTCCTTCTGTCAAAGGTACTTCAGATACTTGCATCTATGTAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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