VISDB Viral Integration Site DataBase

VIS ID

TVIS30005375

Fusion event

HIV-IL6R integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q21.3

Reference genome

Start

End

154385063/154412587 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-23a-3p ; hsa-mir-124-3p ; hsa-mir-125b-5p ; hsa-mir-98-5p ; hsa-mir-451a ; hsa-mir-34c-5p ; hsa-mir-34b-3p ; hsa-mir-34a-5p ; hsa-mir-619-5p ; hsa-mir-3619-3p ; hsa-mir-6807-5p ; hsa-mir-5095 ; hsa-mir-7151-3p ; hsa-mir-4529-5p ; hsa-mir-1292-3p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4793-5p ; hsa-mir-6504-3p ; hsa-mir-4438 ; hsa-mir-335-3p ; hsa-mir-5096 ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-4753-3p ; hsa-mir-7156-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-4284 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-1184 ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-6890-3p ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418 ; hsa-mir-7641 ; hsa-mir-2052 ; hsa-mir-4695-3p ; hsa-mir-4330 ; hsa-mir-5680 ; hsa-mir-5197-5p ; hsa-mir-1537-3p ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-221-5p ; hsa-let-7c-3p ; hsa-let-7a-5p ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-126-5p ; hsa-mir-1277-3p ; hsa-mir-202-3p ; hsa-mir-219a-1-3p ; hsa-mir-331-5p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-4678 ; hsa-mir-4738-3p ; hsa-mir-4795-3p ; hsa-mir-495-3p ; hsa-mir-510-3p ; hsa-mir-515-5p ; hsa-mir-519d-5p ; hsa-mir-519e-5p ; hsa-mir-548ae-3p ; hsa-mir-548ah-3p ; hsa-mir-548aj-3p ; hsa-mir-548am-3p ; hsa-mir-548aq-3p ; hsa-mir-548j-3p ; hsa-mir-548x-3p ; hsa-mir-5582-3p ; hsa-mir-5688 ; hsa-mir-5695 ; hsa-mir-570-3p ; hsa-mir-630 ; hsa-mir-6509-5p ; hsa-mir-653-5p

Nearest miRNA

hsa-mir-101-1/Upstream/218844; hsa-mir-1182/Downstream/563106;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/6618, chr1-CpG: 196/Downstream/89044

Upstream sequence

cctcaggtgatccacccaccttggcctcccaaagtgctgggattacagacgtgagctaccgcgcccggccTTTAAAAGCCTATTTTGATGGGAGGAGGGG

Downstream sequence

GATGCTATAATGTGAGGACTTTCTCCCAGAAAAGGAGAGAGAGGCACTAATGCAGTGGGGATAATAATTAAAATCGCTTAACATTttttttgaaagatta