VISDB Viral Integration Site DataBase

VIS ID

TVIS30005376

Fusion event

HIV-ADAR integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q21.3

Reference genome

Start

End

154572688/154600212 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-130b-3p ; hsa-mir-93-5p ; hsa-mir-1226-3p ; hsa-mir-625-5p ; hsa-mir-484 ; hsa-mir-197-3p ; hsa-mir-889-5p ; hsa-mir-17-5p ; hsa-mir-432-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-6842-3p ; hsa-mir-1273h-5p ; hsa-mir-6799-5p ; hsa-mir-7106-5p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-3652 ; hsa-mir-4430 ; hsa-mir-6894-5p ; hsa-mir-5580-5p ; hsa-mir-4722-5p ; hsa-mir-1286 ; hsa-mir-873-5p ; hsa-mir-3605-5p ; hsa-mir-4794 ; hsa-mir-664a-5p ; hsa-mir-6871-5p ; hsa-mir-2392 ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-4796-3p ; hsa-mir-20b-5p ; hsa-mir-106a-5p ; hsa-mir-20a-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-106b-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-1324 ; hsa-mir-4272 ; hsa-mir-449b-3p ; hsa-mir-5000-5p ; hsa-mir-561-5p

Nearest miRNA

hsa-mir-101-1/Upstream/406469; hsa-mir-1182/Downstream/375481;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/27975, chr1-CpG: 48/Downstream/7692

Upstream sequence

TAGGAGGCAGGCATGATATTGATGCATGGAGATCAATCATGtttttcttttttctttctttttccaagatggagtctcactctgtcgcccaggctggagt

Downstream sequence

gcagtggcgccaatctcggctcactacaacctccacctcctgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcaagcacc