Basic Information
VIS ID
TVIS30005384
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
154952280/154979804 (Hg38)
End
154952280/154979804 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1F
Nearest miRNA
hsa-mir-101-1/Upstream/4021; hsa-mir-1182/Downstream/215373;
Nearest TSS
ENST00000473358/Upstream/2505; ENST00000492620/Downstream/3534;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/4794, chr1-CpG: 49/Downstream/19590
Nearby gene
CKS1B(No orient, 555)
Nearest cancer related gene
CKS1B(OG, No orient, 555)
Upstream sequence
ggaatcacctggggagctttacaagtactgatgcctgcctgagtcattcttaaggattcttaattggtctggagtgtggactgggggtaaagatttCAGG
Downstream sequence
CATCTTATGCAGGTAGGTAAAGAACTAAGCTTTGAGAAAACAGGTGCAAAATGTAGCTGTTTAAGAAAACATTCCAggccacacgtggtggctcacacct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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