Basic Information
VIS ID
TVIS30005396
Fusion event
HIV-YY1AP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q22
Reference genome
GRCh37/hg19
Start
155646168/155676377 (Hg38)
End
155646168/155676377 (Hg38)
Orient
-
Location type
Intronic
Target gene
YY1AP1
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-222-3p ; hsa-mir-16-5p ; hsa-mir-132-3p
Nearest miRNA
hsa-mir-101-1/Upstream/329932; hsa-mir-1182/Downstream/274896;
Nearest TSS
ENST00000473358/Upstream/1303; ENST00000461479/Downstream/3087;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/65840, chr1-CpG: 120/Downstream/11664
Nearest cancer related gene
YY1AP1(OG, No orient, 0)
Upstream sequence
AGGTTAAATTTCAGAATAGATTACTGAGGACTCTTTGAAATCTGTAATTCCGAATACCATTAGGGTCCTTATGTGCTGTCTTCCCTGAGCCACAGGACAT
Downstream sequence
GAACATGATGACTTCTCAAGCTCCTAACTGATGTGAAGATACTACGGTTTTAATACGTAGTAAGGTAACTATCTCTGACATTTACAAAGCTGCTAATTTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate