Basic Information
VIS ID
TVIS30005398
Fusion event
HIV-DAP3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q22
Reference genome
GRCh37/hg19
Start
155664961/155695170 (Hg38)
End
155664961/155695170 (Hg38)
Orient
-
Location type
Intronic
Target gene
DAP3
miRNAs that regulate target gene
hsa-mir-16-5p ; hsa-mir-1296-5p ; hsa-mir-615-3p ; hsa-mir-324-5p ; hsa-mir-106b-5p
Nearest miRNA
hsa-mir-101-1/Upstream/348725; hsa-mir-1182/Downstream/256103;
Nearest TSS
ENST00000473358/Upstream/6068; ENST00000608852/Downstream/14603;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/5836, chr1-CpG: 54/Downstream/50336
Upstream sequence
tctgttgttttaaaaatgtttggaaagatctactacagtagcctggtctgttgtctgtttttaatttttgtggaattcccatgacagtaaaacaggaaag
Downstream sequence
caagtgtctttttatatgtgttgtagtctggctggtttggcaagtagaccatataaatgagaatatgtatctatggtcacatggacataagaaagtttgc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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