Basic Information
VIS ID
TVIS30005399
Fusion event
HIV-GON4L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q22
Reference genome
GRCh37/hg19
Start
155770839/155801048 (Hg38)
End
155770839/155801048 (Hg38)
Orient
+
Location type
Intronic
Target gene
GON4L
miRNAs that regulate target gene
hsa-mir-106b-5p
Nearest miRNA
hsa-mir-101-1/Upstream/454603; hsa-mir-1182/Downstream/150225;
Nearest TSS
ENST00000473358/Upstream/16659; ENST00000368324/Downstream/3976;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/54931, chr1-CpG: 27/Downstream/58270
Upstream sequence
aacaaattgattctgtaactttgagcaagacaatgaatttctctgagatttcactgcctacaaagtggttagaactatctgtcctTGggcaacccactcg
Downstream sequence
ggtcccctaccacgttgtggaaactttgttctttaactcttcacaataaatcttgctgctgctcaaaaaaaaaaaaaaaaaaaaaaagaaCTCTCTGTCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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