Basic Information
VIS ID
TVIS30005403
Fusion event
HIV-GON4L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q22
Reference genome
GRCh37/hg19
Start
155817646/155847855 (Hg38)
End
155817646/155847855 (Hg38)
Orient
-
Location type
Intronic
Target gene
GON4L
miRNAs that regulate target gene
hsa-mir-106b-5p
Nearest miRNA
hsa-mir-101-1/Upstream/501410; hsa-mir-1182/Downstream/103418;
Nearest TSS
ENST00000473358/Upstream/26335; ENST00000368324/Downstream/5550;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/101738, chr1-CpG: 27/Downstream/11463
Upstream sequence
cccaggtactcgaaaggctggggtaggagaatcccttgaacccaggaggcgggggttgcggtgagccaagatcgtgccactacactccagcctggggaac
Downstream sequence
agagtgagactctgtctcaaaataaataaacaataaataaaTATATACATACATACATACAAAGAAGAAAAGtcccaccactgccatgacagtttacaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate