VISDB Viral Integration Site DataBase

VIS ID

TVIS30005405

Fusion event

HIV-SLC25A44 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q22

Reference genome

Start

End

156180543/156210752 (Hg38)

Orient

-

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-548b-3p ; hsa-mir-7-5p ; hsa-mir-26b-5p ; hsa-mir-328-3p ; hsa-mir-92a-3p ; hsa-mir-203b-5p ; hsa-mir-4774-5p ; hsa-mir-6718-5p ; hsa-mir-3202 ; hsa-mir-4476 ; hsa-mir-6876-5p ; hsa-mir-1262 ; hsa-mir-4701-3p ; hsa-mir-5681b ; hsa-mir-6736-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-519a-3p ; hsa-mir-7515 ; hsa-mir-5683 ; hsa-mir-3164 ; hsa-mir-6820-3p ; hsa-mir-548l ; hsa-mir-6734-5p ; hsa-mir-1226-5p ; hsa-mir-6834-5p ; hsa-mir-526b-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-6875-5p ; hsa-mir-4419a ; hsa-mir-3126-5p ; hsa-mir-1252-5p ; hsa-mir-6760-5p ; hsa-mir-1264 ; hsa-mir-651-3p ; hsa-mir-4722-5p ; hsa-mir-1286 ; hsa-mir-873-5p ; hsa-mir-6741-5p ; hsa-mir-4762-3p ; hsa-mir-6499-3p ; hsa-mir-4539 ; hsa-mir-8485 ; hsa-mir-548n ; hsa-mir-629-3p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-513a-5p ; hsa-mir-27a-3p ; hsa-mir-27b-3p

Nearest miRNA

hsa-mir-101-1/Upstream/259416; hsa-mir-1182/Downstream/209589;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/16491, chr1-CpG: 52/Downstream/2041

Upstream sequence

GGCTCCCTCACTCAGTCCCTGTATTTGATACTGGCCTAAAGACCCCACCCCCCACCCTGCCAGCCCTTCTTCTGGCTTCCCCTTCCATCTGTGTCCCTGA

Downstream sequence

GACCCTGAGAAGAGCTGTACATAGAGCTTGCTTACTACCACTGGTTCTTCCTCTTGGGCTTTCAGCCCAGACTCCAAGCAGCTGCTATCAACCCTCTCTC