VISDB Viral Integration Site DataBase

VIS ID

TVIS30005406

Fusion event

HIV-MEF2D integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q22

Reference genome

Start

End

156457394/156487602 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-99a-5p ; hsa-mir-26b-5p ; hsa-mir-19b-3p ; hsa-mir-877-5p ; hsa-mir-320a ; hsa-let-7f-5p ; hsa-mir-122-5p ; hsa-mir-210-3p ; hsa-mir-142-3p ; hsa-mir-7109-5p ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-92a-2-5p ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-6835-5p ; hsa-mir-6885-5p ; hsa-mir-328-5p ; hsa-mir-6887-5p ; hsa-mir-6795-5p ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-4712-3p ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-583 ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-642b-3p ; hsa-mir-642a-3p ; hsa-mir-1324 ; hsa-mir-4789-3p ; hsa-mir-6789-5p ; hsa-mir-6813-5p ; hsa-mir-6826-5p ; hsa-mir-6085 ; hsa-mir-6743-5p ; hsa-mir-4688 ; hsa-mir-335-5p ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-670-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-210-5p ; hsa-mir-4749-3p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-1236-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-3667-3p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-877-3p ; hsa-mir-5088-3p ; hsa-mir-6887-3p ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-18a-5p ; hsa-mir-103a-3p ; hsa-mir-19a-3p ; hsa-let-7a-5p ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-1207-5p ; hsa-mir-1254 ; hsa-mir-1302 ; hsa-mir-1321 ; hsa-mir-1915-3p ; hsa-mir-211-3p ; hsa-mir-3116 ; hsa-mir-3153 ; hsa-mir-3170 ; hsa-mir-3173-3p ; hsa-mir-3689d ; hsa-mir-3929 ; hsa-mir-4259 ; hsa-mir-4270 ; hsa-mir-4298 ; hsa-mir-4419b ; hsa-mir-4433a-3p ; hsa-mir-4441 ; hsa-mir-4458 ; hsa-mir-4478 ; hsa-mir-4499 ; hsa-mir-4500 ; hsa-mir-4524b-3p ; hsa-mir-4648 ; hsa-mir-4726-3p ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-485-5p ; hsa-mir-5572 ; hsa-mir-5584-5p ; hsa-mir-571 ; hsa-mir-6081 ; hsa-mir-6134 ; hsa-mir-615-5p ; hsa-mir-6510-5p ; hsa-mir-6733-5p ; hsa-mir-6737-5p ; hsa-mir-6739-5p ; hsa-mir-6754-5p ; hsa-mir-6761-5p ; hsa-mir-6764-5p ; hsa-mir-6768-5p ; hsa-mir-6812-5p ; hsa-mir-6819-5p ; hsa-mir-6840-3p ; hsa-mir-6851-5p ; hsa-mir-6855-5p ; hsa-mir-6884-5p ; hsa-mir-6891-5p ; hsa-mir-7156-3p ; hsa-mir-7-5p ; hsa-mir-7704 ; hsa-mir-9500 ; hsa-mir-98-5p

Nearest miRNA

hsa-mir-101-1/Upstream/67173; hsa-mir-1182/Downstream/448529;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/30032, chr1-CpG: 112/Downstream/12223

Upstream sequence

TCCTTCTGCTATCCATTCCACATTGCTGCAGGGTCTTTGAAAGCCCTGAGGCAAGAACATGAACTCAACCCTGATTTTGGAAGAAGGGGTAGCTGGGGCC

Downstream sequence

TAGGCAGGCACAAAATACCCTAACCTGACCCTATCCAAGGTTTGGAGGCCTATCCTAGCTAAACTTCCCTCCTACCCAATTAGGGAGGTTTTAATGAACA