Basic Information
VIS ID
TVIS30005409
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
157168271/157198481 (Hg38)
End
157168271/157198481 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/262237; hsa-mir-1182/Downstream/2701498;
Nearest TSS
ENST00000473358/Upstream/60007; ENST00000607010/Downstream/38655;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/3136, chr1-CpG: 28/Downstream/780449
Nearby gene
ETV3(No orient, 59888)
Nearest cancer related gene
ETV3(OG, No orient, 59888)
Upstream sequence
GAGTCTCAGGgtttcgggctgaactgtgtccctgcagaattcaactggggatggaaattctaacccccagtacctctgaatgtgactgtatttgagatgg
Downstream sequence
ggcctttaaagacatgaggaaggtaaactgaagtcaaatgggtgggttctaatccaatacacctggtgtccttataagaacaggagattgggagattagg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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