Basic Information
VIS ID
TVIS30005412
Fusion event
HIV-CD84 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
160547591/160577801 (Hg38)
End
160547591/160577801 (Hg38)
Orient
+
Location type
Intronic
Target gene
CD84
miRNAs that regulate target gene
hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-3653-5p ; hsa-mir-216b-5p ; hsa-mir-216a-5p ; hsa-mir-6505-5p ; hsa-mir-501-5p ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-6877-3p ; hsa-mir-7109-3p ; hsa-mir-6819-3p ; hsa-mir-7150 ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-4695-3p ; hsa-mir-6787-3p ; hsa-mir-6736-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-627-3p ; hsa-mir-6809-3p ; hsa-mir-4753-3p ; hsa-mir-340-5p ; hsa-mir-130b-5p ; hsa-mir-6817-3p ; hsa-mir-4637 ; hsa-mir-7844-5p
Nearest miRNA
hsa-mir-101-1/Upstream/677722; hsa-mir-1182/Downstream/649385;
Nearest TSS
ENST00000473358/Upstream/26391; ENST00000588034/Downstream/1672;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/158205, chr1-CpG: 24/Downstream/224092
Upstream sequence
tagctgatatctgttaaacacttactatattcaggtaccatggcaagtgttgtacatgcattatcatcattttgattctcaaaacaattctactgtatta
Downstream sequence
atacctccccattttgaagctgaaacaagagtcagaggaggaatgtaacttcgtctaggtcacaaaacttgtaaACAATTCACTACTAGCTGATTTGACA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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