VISDB Viral Integration Site DataBase

VIS ID

TVIS30005418

Fusion event

HIV-RGS5 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q23.3

Reference genome

Start

End

163241536/163271746 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-142-3p ; hsa-mir-181a-5p ; hsa-mir-92a-3p ; hsa-mir-20a-5p ; hsa-mir-578 ; hsa-mir-526b-5p ; hsa-mir-4635 ; hsa-mir-124-5p ; hsa-mir-4255 ; hsa-mir-574-5p ; hsa-mir-147a ; hsa-mir-297 ; hsa-mir-644a ; hsa-mir-6867-5p ; hsa-mir-3911 ; hsa-mir-223-5p ; hsa-mir-567 ; hsa-mir-6787-5p ; hsa-mir-663a ; hsa-mir-1908-5p ; hsa-mir-4749-5p ; hsa-mir-4706 ; hsa-mir-511-3p ; hsa-mir-595 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-6875-3p ; hsa-mir-6083 ; hsa-mir-6868-3p ; hsa-mir-4778-3p ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-4446-5p ; hsa-mir-642a-5p ; hsa-mir-1290 ; hsa-mir-876-5p ; hsa-mir-3167 ; hsa-mir-6839-5p ; hsa-mir-378j ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-1243 ; hsa-mir-204-3p ; hsa-mir-7-5p ; hsa-mir-9-3p ; hsa-mir-96-3p ; hsa-mir-23a-3p ; hsa-mir-23b-3p ; hsa-mir-211-3p

Nearest miRNA

hsa-mir-101-1/Upstream/929106; hsa-mir-1182/Downstream/2636175;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/448962, chr1-CpG: 52/Downstream/49943

Upstream sequence

tagtattttgttgtttggacacaccacatgttaatcactcaccagttgatggacatttggattgtttctagttttagcctattatgaatactgctgctat

Downstream sequence

gaacatttgcatttaagtccctttgtgggcatatgttttcgtttctcttgcttagattcctgggagtagaattgctgggtcatatggtaaatttatgttt