Basic Information
VIS ID
TVIS30005423
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
166683764/166714527 (Hg38)
End
166683764/166714527 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/559729; hsa-mir-1182/Downstream/1284133;
Nearest TSS
ENST00000473358/Upstream/224488; ENST00000449930/Downstream/124920;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/547316, chr1-CpG: 112/Downstream/124577
Nearby gene
FMO9P(No orient, 89291)
Upstream sequence
tacaatgttaaaaggaaaaaacagggaagaggaaataacaagagaaataattcaggaagaggatgtaagagttataaatatatatatatatatatatata
Downstream sequence
tatatatctccaacataggagtacccaaatatataaagcaaatattattagatctaaaggaagagatagacttcaatacaatagtagggaacttcaacaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate