Basic Information
VIS ID
TVIS30005424
Fusion event
HIV-FMO11P integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
166754976/166785739 (Hg38)
End
166754976/166785739 (Hg38)
Orient
+
Location type
Intronic
Target gene
FMO11P
Nearest miRNA
hsa-mir-101-1/Upstream/630941; hsa-mir-1182/Downstream/1212921;
Nearest TSS
ENST00000473358/Upstream/295700; ENST00000449930/Downstream/53708;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/618528, chr1-CpG: 112/Downstream/53365
Nearby gene
POGK(No orient, 53665)
Upstream sequence
TATTTCTCAGAGAACAAACTCACCCAAAGCTGGTTAATCCTTTGGAATTTCCCACTGTCCACAACAGGTTACCACAAACACTGGAAGGATAGACTGATGC
Downstream sequence
AAATCTATGTATTCTATTAAAATATTTTAACCCAAAGTTCCCTGTGGAGGAATATAATTTGATGCATTGTTATTCTTCCCAGAGACATTTACTTAGCTCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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