Basic Information
VIS ID
TVIS30005427
Fusion event
HIV-DCAF6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
168001609/168032371 (Hg38)
End
168001609/168032371 (Hg38)
Orient
+
Location type
Intronic
Target gene
DCAF6
miRNAs that regulate target gene
hsa-mir-100-5p ; hsa-let-7e-5p
Nearest miRNA
hsa-mir-101-1/Upstream/33645; hsa-mir-1182/Downstream/343153;
Nearest TSS
ENST00000473358/Upstream/16484; ENST00000478668/Downstream/10359;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/94808, chr1-CpG: 33/Downstream/23899
Upstream sequence
ATGAAATGTGTTGCCTCACAGTTATCTGTAGGGTAGATAGATCTTCTCTGTTAGCAGTCTACTCCTAGAAGCAGCATCTCCACTTTGAATCCAGATATGC
Downstream sequence
TTCCTTATACAAATAGTTGGAAGGAGAATTGGAGATCCTCTAATCTGGAATCTACAAAAAAGTTGTGGATTCCCTGACCTATGAACATGGAAAATTTTGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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