Basic Information
VIS ID
TVIS30005428
Fusion event
HIV-LOC107985745 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
169645006/169675865 (Hg38)
End
169645006/169675865 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107985745
Nearest miRNA
hsa-mir-101-1/Upstream/1300244; hsa-mir-1182/Downstream/475513;
Nearest TSS
ENST00000473358/Upstream/13858; ENST00000496973/Downstream/27464;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/189526, chr1-CpG: 30/Downstream/118967
Nearby gene
SELL(No orient, 14800)
Upstream sequence
GCTATAAACTTGGGACCTGGGTTTAAGCATTTTAAATGCCAAGTTCACCATTTTCTAAAACACAACAAATACCCAGTGAGAGAGGGAGAAGGGAAGTAAA
Downstream sequence
TGCCTCTGAATAAGCAAGTTAATGTCAGTAGTTGTACTGTATGCATATTGATGAACAATAGAGGAACCAATGTCCAATCAGATGAGCAGGATATTTGGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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