VISDB Viral Integration Site DataBase

VIS ID

TVIS30005431

Fusion event

HIV-PRRC2C integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q24.3

Reference genome

Start

End

171505031/171535892 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-mir-16-5p ; hsa-mir-877-3p ; hsa-mir-342-5p ; hsa-mir-324-3p ; hsa-mir-320a ; hsa-mir-149-5p ; hsa-mir-218-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-100-5p ; hsa-mir-20a-5p ; hsa-mir-19a-3p ; hsa-mir-3163 ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-221-5p ; hsa-mir-1263 ; hsa-mir-8073 ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-5579-3p ; hsa-mir-4536-5p ; hsa-mir-593-5p ; hsa-mir-7851-3p ; hsa-mir-619-3p ; hsa-mir-1277-5p ; hsa-mir-6083 ; hsa-mir-3924 ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-410-3p ; hsa-mir-607 ; hsa-mir-3671 ; hsa-let-7a-2-3p ; hsa-let-7c-3p ; hsa-let-7g-3p ; hsa-mir-202-5p ; hsa-mir-223-3p ; hsa-mir-302f ; hsa-mir-4302 ; hsa-mir-4448 ; hsa-mir-4697-3p ; hsa-mir-4780 ; hsa-mir-493-5p ; hsa-mir-592 ; hsa-mir-597-5p ; hsa-mir-623 ; hsa-mir-6733-3p ; hsa-mir-6772-3p ; hsa-mir-6780b-3p ; hsa-mir-6834-3p

Nearest miRNA

hsa-mir-101-1/Upstream/434086; hsa-mir-1182/Downstream/602906;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/49792, chr1-CpG: 26/Downstream/134915

Upstream sequence

TATAGACACCATCTTCCATTTCTAGGAGATAGATCATACAGTGCTTGAGTATAAGGTAAAATGTTATAGTTCATCTTTCAGTTTTTTGTCTTGCCAACTC

Downstream sequence

TTAACTGTTAAATACCTTTTGAACTCTTACTTTTCCTTCAAGGATTCAAAACAGGCCATTATTTTGTGATATGATTGATTATGTTAATTTGTCATGTGGA