VISDB Viral Integration Site DataBase

VIS ID

TVIS30005438

Fusion event

HIV-SUCO integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q24.3

Reference genome

Start

End

172567195/172598055 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-93-5p ; hsa-mir-26b-5p ; hsa-mir-484 ; hsa-mir-142-3p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-576-5p ; hsa-mir-3942-3p ; hsa-mir-4263 ; hsa-mir-3978 ; hsa-mir-5100 ; hsa-mir-513a-5p ; hsa-mir-124-5p ; hsa-mir-5093 ; hsa-mir-10b-3p ; hsa-mir-5002-5p ; hsa-mir-4255 ; hsa-mir-5197-5p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-183-5p ; hsa-mir-7158-5p ; hsa-mir-4999-3p ; hsa-mir-95-5p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-106a-5p ; hsa-mir-17-5p ; hsa-mir-20b-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-520a-3p ; hsa-mir-520b ; hsa-mir-302a-3p ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-520e ; hsa-mir-373-3p ; hsa-mir-302e ; hsa-mir-372-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-302b-3p ; hsa-mir-302a-5p ; hsa-mir-4772-5p ; hsa-mir-383-5p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-548g-3p ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p

Nearest miRNA

hsa-mir-101-1/Upstream/453411; hsa-mir-1182/Downstream/3370315;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/64650, chr1-CpG: 100/Downstream/878784

Upstream sequence

tttgttgaagcccaatatatcagttttctctttgctctatgaaatatttgcctaacgcaaaatcacaaagattttttcctttgttttttctagaagctta

Downstream sequence

atagtttagttttatattaggcccatgattcattttgagttaactttgatgtgttacagggtatggatcaaagttctttttggaaagtcagggttagaag