Basic Information
VIS ID
TVIS30005441
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
176329908/176360772 (Hg38)
End
176329908/176360772 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/392293; hsa-mir-1182/Downstream/668591;
Nearest TSS
ENST00000473358/Upstream/153124; ENST00000493665/Downstream/102399;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/153097, chr1-CpG: 44/Downstream/803484
Nearby gene
PAPPA2(No orient, 102399)
Upstream sequence
ggtctcagaaataacaccacacatctacaaccatctgatctttgacaaatctgacaaaaacaagaaatggggaaagaattccctgtttaataaatggtgc
Downstream sequence
tggaaaactggctagccatatgtagaaagctgaaactggatcccttccttataccttatacaaaaattaattcaagatggattgaagacttaaatgtaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate