Basic Information
VIS ID
TVIS30005446
Fusion event
HIV-ACBD6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
180471061/180501926 (Hg38)
End
180471061/180501926 (Hg38)
Orient
+
Location type
Intronic
Target gene
ACBD6
miRNAs that regulate target gene
hsa-mir-193b-3p
Nearest miRNA
hsa-mir-101-1/Upstream/63536; hsa-mir-1182/Downstream/12214402;
Nearest TSS
ENST00000473358/Upstream/71664; ENST00000442621/Downstream/1028;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/266086, chr1-CpG: 92/Downstream/264
Upstream sequence
CCAGCTAAATAAACATCACTCCTAAGAAAGCAAACATCTTTTCCACGTTCAGGATGATGCTCATCCCCAGCAGATGGTCAAAAAAAAAAAAACAAAACAA
Downstream sequence
AATACACATACACAAGCTTCATTACACCTAGCTATTAACCATACATGCTTGCTATCAGTTGTTGAGGAAGAAGGCTCCGTGTCTTTCTCCCCCATCCACC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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