Basic Information
VIS ID
TVIS30005450
Fusion event
HIV-MIR548F1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
186381595/186412463 (Hg38)
End
186381595/186412463 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA1K
Target gene
MIR548F1
Nearest miRNA
hsa-mir-101-1/Upstream/5974073; hsa-mir-1182/Downstream/6303865;
Nearest TSS
ENST00000473358/Upstream/11891; ENST00000461662/Downstream/4914;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/36747, chr1-CpG: 23/Downstream/268216
Upstream sequence
caggtgacatttgagttcgttttgaaggatgaataCAAATAAAAGTAGCTTTTTAGGAATTGAACACTGGTATGAGATGTATTACAACCAAGAATATGAC
Downstream sequence
TTACCTAGAAGTATAAGTTTCATCAAGCATTTGTTAAATTGGAAGGAATGATATAGTAATTCTGCATATTTATTATAAAGAACACATTCCCAAATAATAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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