Basic Information
VIS ID
TVIS30005451
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
187401628/187432496 (Hg38)
End
187401628/187432496 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1K
Nearest miRNA
hsa-mir-101-1/Upstream/6994106; hsa-mir-1182/Downstream/5283832;
Nearest TSS
ENST00000473358/Upstream/125102; ENST00000614505/Downstream/208730;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/751547, chr1-CpG: 56/Downstream/5376006
Nearby gene
LINC01037(No orient, 11132)
Upstream sequence
TATCACTAGTATCTTCAATaataataatcgtagttcacacttacatggcactttttatggttgaggaactgttctaagcactttacatatgttaattcaa
Downstream sequence
ctttcataagtcctttaaggtcattactattattatccccatttcgtaggtgagtctgatatacagaaaatagaaaaatgtgttcagtttctgattgatg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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