Basic Information
VIS ID
TVIS30005454
Fusion event
HIV-LOC105371664 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
192519144/192550014 (Hg38)
End
192519144/192550014 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1K
Target gene
LOC105371664
Nearest miRNA
hsa-mir-101-1/Upstream/12111624; hsa-mir-1182/Downstream/166314;
Nearest TSS
ENST00000473358/Upstream/20435; ENST00000462589/Downstream/25713;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/5869065, chr1-CpG: 56/Downstream/258488
Nearby gene
RGS1(No orient, 25713)
Upstream sequence
CTTTCACTTGAACTGGTCTTTACATAAAATTTTGTCTTTCCCCACATTATTCCTCAGAAGTCTTCATGGTTGCTTCTTAGTAACTAAAGGTTTTAACTaa
Downstream sequence
aaggaaaaaagaaagaaagaaagaagcaaaaaaaaaaaaaaaacaaaaaCGTCTAACCTGCTTCTGTTGCTGCCCTACTTACAGTTACTTAGAAATCGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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