VISDB Viral Integration Site DataBase

VIS ID

TVIS30005457

Fusion event

HIV-CDC73 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q31.2

Reference genome

Start

End

193117194/193148064 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-23b-3p ; hsa-mir-100-5p ; hsa-mir-495-3p ; hsa-mir-5688 ; hsa-mir-5692a ; hsa-mir-4635 ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4733-5p ; hsa-mir-5096 ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-197-3p ; hsa-mir-124-5p ; hsa-mir-1226-3p ; hsa-mir-634 ; hsa-mir-665 ; hsa-mir-6771-5p ; hsa-mir-7160-5p ; hsa-mir-6797-3p ; hsa-mir-4722-5p ; hsa-mir-6076 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-7153-5p ; hsa-mir-146b-5p ; hsa-mir-4649-3p ; hsa-mir-146a-5p ; hsa-mir-6746-5p ; hsa-mir-4768-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6807-3p ; hsa-mir-217 ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-542-3p ; hsa-mir-661 ; hsa-mir-873-3p ; hsa-mir-6776-5p ; hsa-mir-766-3p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-6742-3p ; hsa-mir-6849-3p ; hsa-mir-759 ; hsa-mir-3613-3p ; hsa-mir-5586-3p ; hsa-mir-4797-5p

Nearest miRNA

hsa-mir-101-1/Upstream/11481; hsa-mir-1182/Downstream/3434349;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/25970, chr1-CpG: 24/Downstream/3460514

Nearest cancer related gene

CDC73(TSG, No orient, 0)

Upstream sequence

GGTAAGAATGCTTTACTGCTTTACAGTAGATTTAATGAAGTTGCCACTTATATTGCAGTGTAGTAACGTTGAAGACATCTTCACATTTTAAAATCAGTGG

Downstream sequence

ATTCTAAACCTTTTGCTCCTTTAGCATATCTGAAAGATGTGAAAGCCCTCCCCAACATTAAAAGTTACTTACTTCAGCAGTAATTCTTAACTGGAGCAGT