Basic Information
VIS ID
TVIS30005458
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
193705459/193736329 (Hg38)
End
193705459/193736329 (Hg38)
Orient
+
Fragile sites / regions
FRA1K
Nearest miRNA
hsa-mir-101-1/Upstream/599746; hsa-mir-1182/Downstream/2846084;
Nearest TSS
ENST00000473358/Upstream/47900; ENST00000454538/Downstream/413144;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/614235, chr1-CpG: 24/Downstream/2872249
Upstream sequence
ATATGATTTAATTCATATTAATATGTAATTTCATTTTTTGAGTCTTATGCTTTTACTGCCTAACTGGTACACAGCTGATTAAACAATTTTTTTTCTTATT
Downstream sequence
GCGGAAAACTCTAGAACCGTATATATACATAGCTACCCCAAGTGTATTTTGTTCAAGAAATGTTTAATATCACTCTTATATATTTatgaatattacagaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate