Basic Information
VIS ID
TVIS30005461
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
198545450/198576320 (Hg38)
End
198545450/198576320 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1K
Nearest miRNA
hsa-mir-101-1/Upstream/1993839; hsa-mir-1182/Downstream/282553;
Nearest TSS
ENST00000473358/Upstream/35375; ENST00000367364/Downstream/22548;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/417086, chr1-CpG: 36/Downstream/1459026
Nearby gene
ATP6V1G3(No orient, 35375)
Upstream sequence
tcatttatttcctctacctttcactctgtctttgagtcactcattctcttccatagcttcaattatcagagaagttgctgactttcTGAGTCATAGACTT
Downstream sequence
TAAGTAGCTGACCAAAGCAATGAAACTCCTCCTTCAAATATTGACATAATAATAAACCATTTTATAACATGTGCTCGTaacatttattgagcacttacta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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