Basic Information
VIS ID
TVIS30005466
Fusion event
HIV-LOC107985243 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
199116973/199147845 (Hg38)
End
199116973/199147845 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107985243
Nearest miRNA
hsa-mir-101-1/Upstream/288692; hsa-mir-1182/Downstream/2571663;
Nearest TSS
ENST00000473358/Upstream/126808; ENST00000452199/Downstream/753;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/988611, chr1-CpG: 36/Downstream/887501
Nearby gene
LINC01221(No orient, 71109)
Upstream sequence
aggggaatcacttgagcccaggaattctagaccaacctgggcaacatagcaaaaccatgtttctatttttaaaaaataaaaTAGAATAATATTACATAGT
Downstream sequence
AAAAATAATGGCAATATAGAATACGGATAAGAACATAATGTAatcttacagttataggaagtgcatgcatggtgtcaaaaattaatatatcaaaaagcaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate