Basic Information
VIS ID
TVIS30005469
Fusion event
HIV-DDX59 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
200620586/200651458 (Hg38)
End
200620586/200651458 (Hg38)
Orient
+
Location type
Intronic
Target gene
DDX59
Nearest miRNA
hsa-mir-101-1/Upstream/1792305; hsa-mir-1182/Downstream/1068050;
Nearest TSS
ENST00000473358/Upstream/806; ENST00000568695/Downstream/3411;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/30462, chr1-CpG: 74/Downstream/18026
Upstream sequence
gcctttagggggtgattaagttatgaaggctccacccttatgaatggaattagtgcccttctaaaagaggctggatggagctctgtgtgaggatgcagga
Downstream sequence
agagggtgctgatgccatctttgaagtagagagcaggccctcaccagacactgaatcaaggctacagctttgatccccgacttcccagcttcaagaactg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate