Basic Information
VIS ID
TVIS30005475
Fusion event
HIV-ZC3H11A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
203777248/203808120 (Hg38)
End
203777248/203808120 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZC3H11A
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-1-3p ; hsa-mir-16-5p ; hsa-let-7b-5p ; hsa-mir-27b-3p ; hsa-mir-129-5p ; hsa-mir-503-3p ; hsa-mir-1238-5p ; hsa-mir-4460 ; hsa-mir-4481 ; hsa-mir-4536-5p ; hsa-mir-4727-3p ; hsa-mir-4745-5p ; hsa-mir-4758-5p ; hsa-mir-6504-3p ; hsa-mir-185-5p ; hsa-mir-4306 ; hsa-mir-4644 ; hsa-mir-5192 ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-582-5p ; hsa-mir-101-3p ; hsa-mir-144-3p ; hsa-mir-137 ; hsa-mir-3591-5p ; hsa-mir-6857-3p ; hsa-mir-4494 ; hsa-mir-140-5p ; hsa-mir-6718-5p ; hsa-mir-203b-5p ; hsa-mir-4499 ; hsa-mir-5010-3p ; hsa-mir-2113 ; hsa-mir-4752 ; hsa-mir-6833-5p ; hsa-mir-4753-3p ; hsa-mir-7847-3p ; hsa-mir-6770-5p ; hsa-mir-130b-5p ; hsa-mir-425-5p ; hsa-mir-3154
Nearest miRNA
hsa-mir-101-1/Upstream/1804884; hsa-mir-1182/Downstream/1640182;
Nearest TSS
ENST00000473358/Upstream/8785; ENST00000480354/Downstream/6785;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/11955, chr1-CpG: 28/Downstream/53259
Upstream sequence
tgtgagccaccatgcctggccTGTTTTGTTTTTTTTCTACTTttattgagtacttttttgtaagttctttttcttaagttagaatattttcttgagtatt
Downstream sequence
tttcaaaagtataagtacataggtgatatactttttgagaatttttgtatctaaaaacttctaagttctgagctatttgtgaaatgtagtttgaaattct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate