Basic Information
VIS ID
TVIS30005478
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
206848974/206675629 (Hg38)
End
206848974/206675629 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/200765; hsa-mir-1182/Downstream/1126223;
Nearest TSS
ENST00000473358/Upstream/39800; ENST00000493447/Downstream/9315;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/39787, chr1-CpG: 135/Downstream/9252
Nearby gene
MAPKAPK2(No orient, 9391)
Upstream sequence
TCACAATGTGACTTCTGAGTGTAGGATCAGTTCTCCTGGATGTTTAGGCCAAGCACAGTTCTTGCTAGTTCTTAGATGGAATGTTGAACTGGCTTAAATA
Downstream sequence
CTTCTAGGATACACAAGAAACTGGGGTGGGGAACTGGGTGGCTGAGGGCTTGGGTGGCTGAGGGCTTAGTTGGCCAGGGAGACATTTTACAAGCTACCCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate