VISDB Viral Integration Site DataBase

VIS ID

TVIS30005480

Fusion event

HIV-CD55 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q32.2

Reference genome

Start

End

207513068/207339723 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-132-3p ; hsa-mir-124-3p ; hsa-mir-16-5p ; hsa-let-7a-5p ; hsa-mir-4760-3p ; hsa-mir-7977 ; hsa-mir-6516-3p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-4278 ; hsa-mir-542-3p ; hsa-mir-6848-5p ; hsa-mir-6846-5p ; hsa-mir-4489 ; hsa-mir-664b-5p ; hsa-mir-4645-3p ; hsa-mir-5697 ; hsa-mir-3938 ; hsa-mir-664a-3p ; hsa-mir-656-3p ; hsa-mir-6732-5p ; hsa-mir-6805-5p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-190a-3p ; hsa-mir-340-5p ; hsa-mir-6853-3p ; hsa-mir-5011-5p ; hsa-mir-5590-3p ; hsa-mir-410-3p ; hsa-mir-142-5p ; hsa-mir-1277-5p ; hsa-mir-548m ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-4752 ; hsa-mir-6833-5p ; hsa-mir-4753-3p ; hsa-mir-3190-3p ; hsa-mir-6124 ; hsa-mir-3148 ; hsa-mir-627-3p ; hsa-mir-130b-5p ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-548c-3p ; hsa-mir-3692-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-3144-3p ; hsa-mir-1252-5p ; hsa-mir-942-5p ; hsa-mir-136-5p ; hsa-mir-6884-3p ; hsa-mir-875-5p ; hsa-mir-6813-3p ; hsa-mir-3200-3p ; hsa-mir-6809-3p ; hsa-mir-4799-5p ; hsa-mir-34b-3p ; hsa-mir-4776-3p ; hsa-mir-192-3p ; hsa-mir-5189-3p ; hsa-mir-532-5p ; hsa-mir-651-3p

Nearest miRNA

hsa-mir-101-1/Upstream/864859; hsa-mir-1182/Downstream/462129;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/17704, chr1-CpG: 72/Downstream/114463

Upstream sequence

AATTTTCAACTCATGGATacccacttcacccacactccctggattatttggaagataatcccagacatcgtatcatttccttcataaacatttcactaag

Downstream sequence

taacctttataaaaacataaccatgtagcatacctaaaaaaatccagtaattccttaatatcagcaaatatttagtcaatatccaaacttccCTGATTAT