Basic Information
VIS ID
TVIS30005481
Fusion event
HIV-HSD11B1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
209877901/209704556 (Hg38)
End
209877901/209704556 (Hg38)
Orient
-
Location type
Intronic
Target gene
HSD11B1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-26b-5p
Nearest miRNA
hsa-mir-101-1/Upstream/81046; hsa-mir-1182/Downstream/2373057;
Nearest TSS
ENST00000473358/Upstream/18287; ENST00000367027/Downstream/290;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/28473, chr1-CpG: 28/Downstream/43052
Upstream sequence
GGGGTAGGGGGACTGAGAGTGAGATTTGGCTTGAGTTTGGCTCTCTTTGCTATTACTCACATTTCCCCCCAGAAGCCCTACATGCACTCCTCTCTCTCTG
Downstream sequence
TCTTTGACAAATTACTTTTGAAAGATCATTGATCCCTGGCGTAAATGGTGTTAAGAGTAAGATGGACTCGGGTAGGGATGCTCAGGAATCCAGTCCTGTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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