Basic Information
VIS ID
TVIS30005486
Fusion event
HIV-ANGEL2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
213170977/212997635 (Hg38)
End
213170977/212997635 (Hg38)
Orient
-
Location type
Intronic
Target gene
ANGEL2
miRNAs that regulate target gene
hsa-mir-590-3p ; hsa-let-7a-5p ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-4261 ; hsa-mir-875-3p ; hsa-mir-4254 ; hsa-mir-3690 ; hsa-mir-4793-5p ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548as-3p ; hsa-mir-548t-3p ; hsa-mir-548aa ; hsa-mir-548ap-3p ; hsa-mir-96-3p ; hsa-mir-4659b-5p ; hsa-mir-4659a-5p ; hsa-mir-7977 ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-6499-3p ; hsa-mir-6817-5p ; hsa-mir-4769-3p ; hsa-mir-4485-5p ; hsa-mir-7108-3p ; hsa-mir-4258 ; hsa-mir-5693 ; hsa-mir-383-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-129-5p ; hsa-mir-133a-3p ; hsa-mir-133b ; hsa-mir-190a-3p ; hsa-mir-3909 ; hsa-mir-4795-3p ; hsa-mir-5011-5p ; hsa-mir-6852-3p ; hsa-mir-6881-3p ; hsa-mir-877-3p
Nearest miRNA
hsa-mir-101-1/Upstream/919950; hsa-mir-1182/Downstream/7120218;
Nearest TSS
ENST00000473358/Upstream/8508; ENST00000468069/Downstream/2935;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/45885, chr1-CpG: 29/Downstream/17542
Upstream sequence
CTCAATAATTAACATACTAATGTGTTTTTTCATTATTTATAACGTGTGAATGCCTCCACTTACTAAAGAACATGTATTCTAACAAGTTTTATTGTGTTTT
Downstream sequence
TAAGAAAGAGAATCAAGGGGGTCTTCAGGAACACTATTTGGAATCCTCTAGACTTTTGATGACAGAGAGGCCATATTCTTCTCTAATTTTTCTTGCTATC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate