Basic Information
VIS ID
TVIS30005487
Fusion event
HIV-RPS6KC1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
213227098/213053756 (Hg38)
End
213227098/213053756 (Hg38)
Orient
-
Location type
Intronic
Target gene
RPS6KC1
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-101-1/Upstream/976071; hsa-mir-1182/Downstream/7064097;
Nearest TSS
ENST00000473358/Upstream/2501; ENST00000468069/Downstream/19182;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/2231, chr1-CpG: 19/Downstream/335640
Upstream sequence
AAGATAGTTGAAAGAGGGGAAGAATCCAGAAAAGGAGAGGGTATGAAAAGGTAGACAGTTGAAGGGGTAGAGTCCATAAAGACCTGGAGGTATGAATGTG
Downstream sequence
TGTGGAACTGGAATTGGAAGCACTGAGTATAATTATTTGTATTGTTACTTTACAAAAGGAAAGGTTAACCAAATTCAGAAttttttttttttttttccaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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