Basic Information
VIS ID
TVIS30005488
Fusion event
HIV-LOC105372912 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
213798363/213625020 (Hg38)
End
213798363/213625020 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105372912
Nearest miRNA
hsa-mir-101-1/Upstream/1547335; hsa-mir-1182/Downstream/6492833;
Nearest TSS
ENST00000473358/Upstream/132719; ENST00000456240/Downstream/106396;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/235405, chr1-CpG: 42/Downstream/354851
Nearby gene
PROX1-AS1(No orient, 194621)
Upstream sequence
aacattcagtctatagcaTAGATTAAGCATGTTCCCTCTTAAAAGTTATTTAtttatttattttgttttgtttcttttccaagacagagcctcactctgt
Downstream sequence
cgcccaggctggagtgcagtggtgtgatctccatcactgcaaatttccaccacccgggttcaagcgattctcctacctcagcctcccgagtagcCCGCCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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