Basic Information
VIS ID
TVIS30005495
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
221936952/221763610 (Hg38)
End
221936952/221763610 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/1562991; hsa-mir-1182/Downstream/2493430;
Nearest TSS
ENST00000473358/Upstream/21434; ENST00000421147/Downstream/77056;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/20148, chr1-CpG: 30/Downstream/701809
Nearby gene
DUSP10(No orient, 21434)
Upstream sequence
ctatccaggtgtcttagttattttgtgctgctataacgaaacacctaagactggggaatttatgaagaactgaaagttctggagtctgggaagtccaagg
Downstream sequence
tcaaggtgccagcaaattcagtttctgatgaggggcccagtctctccttccaagatggcaccttgttgctgtatcctccagagggagtgaacactgtgtc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate