Basic Information
VIS ID
TVIS30005496
Fusion event
HIV-MIA3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
222823164/222649822 (Hg38)
End
222823164/222649822 (Hg38)
Orient
+
Location type
Intronic
Target gene
MIA3
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-384 ; hsa-mir-3685 ; hsa-mir-7975 ; hsa-mir-5571-3p ; hsa-mir-155-3p ; hsa-mir-4724-3p ; hsa-mir-3124-3p ; hsa-mir-3667-3p ; hsa-mir-4795-3p ; hsa-mir-1236-3p ; hsa-mir-4528 ; hsa-mir-2681-5p ; hsa-mir-6885-3p ; hsa-mir-6772-3p ; hsa-mir-127-5p ; hsa-mir-7843-3p ; hsa-mir-3140-3p ; hsa-mir-4448 ; hsa-mir-4268 ; hsa-mir-6806-3p ; hsa-mir-3928-5p ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-92b-3p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30a-5p ; hsa-mir-30b-5p
Nearest miRNA
hsa-mir-101-1/Upstream/2449203; hsa-mir-1182/Downstream/1607218;
Nearest TSS
ENST00000473358/Upstream/559; ENST00000476400/Downstream/8820;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/5493, chr1-CpG: 70/Downstream/62162
Upstream sequence
gcaccactaaactccagcctggacaacagagcaagaccctgtctcaaaaaaagaaatacctgatactgggtaatttataagaagtttaattagctcatgt
Downstream sequence
ttctgcaggctataggaagtatagcggcatctgcttctgaggaggcctcagggagcttttactcacagcagaaggcaaagcgagagcaggccatcttaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate