Basic Information
VIS ID
TVIS30005501
Fusion event
HIV-DNAH14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q42.12
Reference genome
GRCh37/hg19
Start
225230301/225042599 (Hg38)
End
225230301/225042599 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1H
Target gene
DNAH14
Nearest miRNA
hsa-mir-101-1/Upstream/644288; hsa-mir-1182/Downstream/879481;
Nearest TSS
ENST00000473358/Upstream/75053; ENST00000474801/Downstream/75085;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/112520, chr1-CpG: 178/Downstream/384420
Upstream sequence
tcctgggccctgcctctgactttttaactcaatatctctggggataggacctaagaatttgtattttaaataggcactcagTGACTAGGACTAATGATAT
Downstream sequence
ACTGACTCTGGCATCAATTTACAGTCTTTGGGGGGAACTCCTTCATTACAATGTCATTTGTTTCACATGCAATTTACTTATTTTAACATGCAAGTGTCAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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