Basic Information
VIS ID
TVIS30005506
Fusion event
HIV-OBSCN integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q42.13
Reference genome
GRCh37/hg19
Start
228424224/228236523 (Hg38)
End
228424224/228236523 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1H
Target gene
OBSCN
miRNAs that regulate target gene
hsa-mir-155-5p
Nearest miRNA
hsa-mir-101-1/Upstream/139182; hsa-mir-1182/Downstream/160525;
Nearest TSS
ENST00000473358/Upstream/20834; ENST00000366706/Downstream/37874;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/19211, chr1-CpG: 30/Downstream/33237
Upstream sequence
ttggataatttctattgatctgtcttcaatttcactaactttcttctgttattgatattcaactattgagcctatacagtgaattatttcaattactatc
Downstream sequence
ttttcttcttataaactttccactcagtttttctttatatcttctctttctttgctgagactttttaatgttcccattcctttcaagggtatttgctttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate