Basic Information
VIS ID
TVIS30005507
Fusion event
HIV-OBSCN integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q42.13
Reference genome
GRCh37/hg19
Start
228443776/228256075 (Hg38)
End
228443776/228256075 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1H
Target gene
OBSCN
miRNAs that regulate target gene
hsa-mir-155-5p
Nearest miRNA
hsa-mir-101-1/Upstream/158734; hsa-mir-1182/Downstream/140973;
Nearest TSS
ENST00000473358/Upstream/40386; ENST00000366706/Downstream/18322;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/38763, chr1-CpG: 30/Downstream/13685
Upstream sequence
taggttgtgctccttatgagaatctaatgcctgatgatctgaggtggaacagtttcatcctgaaactatcccaccaacccccatctgtggaaaaattgcc
Downstream sequence
ttccatgaagctagtccctgctgccaaaaatgttggggactgccttcttaaactgaataaagacaacaagacagtgctattgataatgggacggaattga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate