Basic Information
VIS ID
TVIS30005509
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q42.13
Reference genome
GRCh37/hg19
Start
229131705/228995958 (Hg38)
End
229131705/228995958 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1H
Nearest miRNA
hsa-mir-101-1/Upstream/533806; hsa-mir-1182/Downstream/2023870;
Nearest TSS
ENST00000473358/Upstream/260881; ENST00000323223/Downstream/42316;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/240754, chr1-CpG: 70/Downstream/274941
Nearby gene
MIR4454(No orient, 178725)
Upstream sequence
cataataactctattaattctctctaagtatttccaagtgtaagccctgctgtgctgctttaatgagtagattcatttataattagcatTCATTTGAAAT
Downstream sequence
CAATATTTTTCTTGCATCCTTTAAAATCTAACTAAAATGAACCTTTCAGAAAAACATCTGTATTAACACCCTCCTGACTAGGCAATCTTAACTGTAGTCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate