Basic Information
VIS ID
TVIS30005510
Fusion event
HIV-LOC105373158 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q42.13
Reference genome
GRCh37/hg19
Start
229182263/229046516 (Hg38)
End
229182263/229046516 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1H
Target gene
LOC105373158
Nearest miRNA
hsa-mir-101-1/Upstream/584364; hsa-mir-1182/Downstream/1973312;
Nearest TSS
ENST00000473358/Upstream/8242; ENST00000323223/Downstream/48389;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/291312, chr1-CpG: 70/Downstream/224383
Nearby gene
MIR4454(No orient, 128167)
Upstream sequence
TGCAAGGTTGTTGGTCTCCTGATGCCTAAGCAGGGATCTTTCCACAGCAGCTCCCAGCCTGGGGCTGAGGACAGCCAGCCTGGGACCCACCCTGGTTCCC
Downstream sequence
GTTCCCCCAGCTGGGAGCTTGGGAAAGTGCAGCAACCCCTCTTCCTTCCACGCCCTGCGTCGGCCACCGTCTTACAGCTGTGTGAGCCCTCCCCAGCTAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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