Basic Information
VIS ID
TVIS30005513
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q42.3
Reference genome
GRCh37/hg19
Start
234760979/234625233 (Hg38)
End
234760979/234625233 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1H
Nearest miRNA
hsa-mir-101-1/Upstream/318694; hsa-mir-1537/Downstream/564801;
Nearest TSS
ENST00000473358/Upstream/15708; ENST00000429269/Downstream/4078;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/13955, chr1-CpG: 30/Downstream/479006
Nearby gene
LINC00184(No orient, 4078)
Upstream sequence
ctcaataaatgtttgtgaactgaTTTGAACTGTGTCGTTGAAGTAGTTCCTCAACTCTGTCCCTTTGTATCATTTTCTTGATATTTGAGCCCTTGCTGCT
Downstream sequence
CTGCCTGGAATCTCTGCTATGATGAAGCAAACCCTTCAACATCTTCTCACTTATAGTTCATCTTTTTCTCTTTTTGAGCCTTGAAATTCAttttatttta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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