VISDB Viral Integration Site DataBase

VIS ID

TVIS30005515

Fusion event

HIV-GPR137B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q42.3

Reference genome

Start

End

236335080/236171780 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-17-5p ; hsa-mir-181a-5p ; hsa-let-7d-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-183-3p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-7157-3p ; hsa-mir-6737-3p ; hsa-mir-5008-3p ; hsa-mir-6889-3p ; hsa-mir-586 ; hsa-mir-4796-3p ; hsa-mir-548n ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6778-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-4438 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-6749-3p ; hsa-mir-7108-3p ; hsa-mir-4258

Nearest miRNA

hsa-mir-101-1/Upstream/318720; hsa-mir-3123/Downstream/1299339;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/28406, chr1-CpG: 108/Downstream/109523

Upstream sequence

ATTGGGAAGGGATTCACAGAAATGAAGGGAGAAGATGGGGAGAAATAAATTTGGATCCAGATGTTAAAAGTGAGATGTTTGGgactgggcgcggtggctc

Downstream sequence

atgcctgtaatcccagcactttgggaggccgaggcaggcagatcacctgagatcaggagtttgagaccatcctggccaacatggtgaaatcccactaaaa